species:   Scscl
pid:       PID1653
parent:    Ssc-milR-129
paralog:   
locus:     NW_001820827.1:616857-616927
matures:   ['CGCUCGAGGGUCAUUCGGGU', 'UUUGGGAUGCGAUCACGGGCGAA']
srr:       SRR12527899
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram NW_001820827.1:616857-616927

3 out of bounds
7 alignments
4 proper strand
4 stranded perfect matches

      ************************          *********************          
AAUCCGGCUUUGGGAUGCGAUCACGGGCGAAUCGCUUCAAACGCUCGAGGGUCAUUCGGGUUGGGUUAACU
((((((((((..((((..((((.((((((............))))))..))))))))))))))))))....
-----------------------------------------CGCUCGAGGGUCAUUCGGGU---------- l=20 a=0 c
--------UUUGGGAUGCGAUCACGGGCGAA---------------------------------------- l=23 a=0 c*
--------UUUGGGAUGCGAUCACGGGCGA----------------------------------------- l=22 a=1 ma
------------------------------------------GCUCGAGGGUCAUUCGGGU---------- l=19 a=0 ma*

--------UUUGGGAUGCGAUCACGGGCGA----------------------------------------- l=22 a=1 (ma)
--------UUUGGGAUGCGAUCACGGGCGAAU--------------------------------------- l=24 a=1 
-----------------------------------------CGCUCGAGGGUCAUUCGGGUU--------- l=21 a=1 
----------------------------------------------GAGGGUCAUUCGGGUUGGGUUA--- l=22 a=1 

mb-01011
ax-1011011
ku-01
ss-110110111100
fn-101
